COMD 802 - Neuroimaging: from image to inference
Overview
Schedule
  1. Aug 28, 2007: Overview.
  2. Sep 4 2007: MRI physics: Image Acquisition.. Also available is Dr. Michael Schillaci's perspective on the same topic.
  3. Sep 11 2007: MRI physics: Image Contrast. Also available is Dr. Michael Schillaci's perspective on the same topic.
  4. Sep 18 2007: fMRI Paradigm Design.
  5. Sep 25 2007: Meet at Brain Imaging Center to Collect Data
  6. Oct 2 2007: Statistics and Thresholding. We will also analyze some data
  7. Oct 9 2007: Spatial Processing I: Spatial Registration - realignment (motion correction), coregistration, normalization; Spatial interpolation - linear, spline, sinc functions
  8. Oct 16 2007: Spatial Processing Continued II: Smoothing - filters, edge detection, gaussian blur; Advanced spatial concepts: homogeneity correction, motion related intensity changes, undistorting EPI images (using field maps).
  9. Oct 23 2007: Temporal Processing
  10. Oct 30 2007: Detecting subtle changes in brain structure: Voxel Based Morphometry and Diffusion Tensor Imaging.
  11. Nov 6 2007: Lesion symptom mapping
  12. Nov 13 2007:Advanced methods Includes adaptation, sparse and resting state paradigms; analysis includes ICA, effective and functional connectivity; alternatives include ASL and perhaps msMRI.
  13. Nov 20 2007:fMRI analysis using machine learning (Dr Svetlana V. Shinkareva).
  14. Nov 27 2007:FSL vs SPM and alternative tools
  15. Dec 4 2007: student presentations
Course Resources: Relevant Links:

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